Library Preparation Designed for mNGS, Not for Host Genomes

Whole-genome sequencing (WGS) library kits introduce bias and loss

Host-Biased

General WGS kits skew microbial representation and undermine accurate taxonomic profiling.

Signal Loss Through Handling

Multi-step purification invites contamination and blurs microbial signals, reducing sensitivity.

Failure at Low Biomass

mNGS samples often fail QC because their DNA levels fall below Qubit detection limits..

Added Complexity, Less Control

Separate beads and indexed primers increase variability and disrupt workflow consistency.

Libraries Purpose-Built for Metagenomics

The Unison Ultralow DNA NGS Library Kits overcome the intrinsic limitations of general WGS kits, enabling accurate, high-yield libraries from low-biomass and host-depleted specimens.

For labs evaluating low-input mNGS library prep

Unison is the library-preparation step for host-depleted, low-biomass, and microbiology samples where standard WGS library prep can fail or distort the microbial profile.

  • Low-input DNA: PaRTI-Seq source material supports library construction from as little as 10 pg DNA input; the Unison benchmark supports reliable library generation from 0.1 ng, diversity stability down to 1 ng, and phylum-level structure maintained at 0.1 ng.
  • Host-depleted samples: when Devin host depletion reduces host background, the remaining microbial DNA can be sub-nanogram and needs ultralow-input library construction.
  • Metagenomic workflows: the Unison benchmark used Illumina NovaSeq sequencing and microbiome DNA serial dilutions from 100 ng to 10 pg.
  • Workflow fit: review Unison library prep, then pair it with the Devin Host Depletion Filter upstream and PaRTI-Seq Analysis downstream when the goal is a complete sample-to-report mNGS workflow.

Ask about Unison fit for your lab

Benefits for Your Lab

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Single-Step Precision

Proprietary Tn5-based tagmentation unites fragmentation and adapter attachment in one enzymatic step, minimizing handling, contamination risk, and amplification bias while preserving authentic microbial composition.

02

Balanced Libraries at Any Input

Saturation-based normalization maintains controlled insert sizes and even representation across variable input levels—including DNA below Qubit detection thresholds—ensuring reproducible downstream analyses.

03

No Sample Left Behind

Unison generates complete, high-fidelity libraries from sub-nanogram inputs, rescuing samples that would otherwise fail post-purification QC.

Unison Ultralow DNA NGS Library Prep Kits

(8 or 48 reactions)

Designed for small- to medium-scale studies, the manual kits provide reliable library construction from inputs that fall below conventional detection thresholds.

PRiSM Assay

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PaRTI-Seq Assay

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Consistent insert sizes by two step magnetic beads=based purification for various applications

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Performance demonstrated from ≥1 ng down to 10 pg input

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One-step tagmentation reduces handling and preserves sample integrity

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Normalization ensures similar yields across variable DNA inputs ≥1 ng

Unison Benefits

Unison Complete Ultralow DNA NGS Library Prep Kit

(48 reactions)

The Complete Kit consolidates all reagents including enzymes, magnetic beads, and indexed primers for library construction into a single box, reducing variability and simplifying procurement for demanding projects.

PRiSM Assay

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PaRTI-Seq Assay

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Fully automated workflow reduces contamination and human error

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Reproducible performance across large-scale sequencing projects

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Maintains low-input capability while increasing throughput

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Streamlined processing reduces hands-on time and accelerates turnaround

Unison Automated Benefits

Unison Complete Ultralow DNA NGS Library Prep Kit

(96 reactions)

Built for high-throughput environments, the Automated Kit is optimized for the PrepBot™ instrument to standardize results across large batches with minimal hands-on time.

PRiSM Assay

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PaRTI-Seq Assay

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Integrated reagents reduce sourcing complexity and run-to-run variability

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Supports low-input and host-depleted samples, lowering workflow failure rates

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Maintains throughput while reducing rework and sample attrition

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Enables reproducible results across diverse metagenomic applications

Unison Complete Benefits

Unison Performs Across All Input Levels

Independent benchmarking compared Unison against Illumina TruSeq DNA Nano, Illumina DNA Prep, and NEBNext Ultra II. The studies show that Unison maintains diversity, reproducibility, and taxonomic fidelity at input levels where conventional kits lose performance.

The Comparative Research Summary: Benchmarking results of Unison versus Illumina and NEB kits at ultralow input levels

Alpha Diversity Plots

Unison maintained stable Shannon and Simpson indices down to 1 ng input, whereas both Illumina DNA Prep and NEBNext Ultra II experienced a pronounced drop in diversity

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Figure 1. Alpha diversity (Shannon and Simpson indices) across input levels. Unison maintains microbial diversity at inputs down to 1 ng, while NEB and Illumina show substantial declines below this threshold.

Beta Diversity PCoA Plot

Replicate libraries generated with Unison clustered tightly in PCoA analysis, reflecting minimal amplification bias and strong reproducibility. Illumina and NEBNext libraries spread widely, indicating greater variability and reduced consistency.

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Figure 2. Beta diversity PCoA plots of replicate libraries. Unison replicates cluster tightly at ≥1 ng inputs, in contrast to the wider spread observed with Illumina and NEBNext.

Phylum-Level Bar Charts

At 0.1 ng input, Unison preserved phylum-level community structure without overamplification artifacts. Illumina and NEBNext libraries distorted composition, including enrichment of Actinobacteria – a hallmark of low-input PCR bias.

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Figure 3. Phylum-level taxonomic composition at decreasing input levels. Unison maintained balanced representation of major phyla down to 0.1 ng, while Illumina and NEBNext showed distortions and loss of fidelity.

Implications for Trace and Irreplaceable Samples

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Failed library preparation delays reporting, wastes sequencing runs, and wastes samples. Clinical fluids, swabs, and host-depleted extracts rarely allow recollection, making every input valuable. Benchmarking shows that only Unison sustained replicate consistency and taxonomic fidelity at 1 ng.

Why Choose Unison

Unison kits are engineered for mNGS and specifically for complex and host-depleted samples. Only Unison supports:

Flexible input

Generates libraries from as little as 10 pg of DNA and supports double-stranded, high molecular weight DNA (>1 kb) for normalized Illumina-ready fragments.

Minimal manipulation

A one-step tagmentation method reduces handling and preserves input integrity.

Versatility and compatibility

Works with DNA from human, mammalian, and microbial samples across all Illumina sequencing platforms.

Fast preparation

Integrates fragmentation, adapter addition, and normalization in a single Tn5-based step.

Consistent yields with minimal bias

Delivers consistent insert sizes and reliable library yields across diverse DNA inputs with built-in normalization.

Cost efficiency

When used together with Devin Microbial DNA Enrichment kit, enables pathogen identification from ~5 million reads at 100 bp read lengths, reducing sequencing cost and time

Ready to Sequence What Others Miss?